Usage
Basic Usage
SeekPValue -i <genes.txt> -x <db list> -d <input directory> -D <output_dir>
Detailed Usage
package "SeekPValue"
version "1.0"
purpose "Estimates P-Value of the retrieved genes based on a background of random queries"
section "Main"
option "port" t "Port"
string default="9005"
option "random_dir" R "Random directory"
string typestr="directory" yes
option "random_num" N "Number of random trials"
int default="100" yes
option "input" i "Gene mapping file"
string typestr="filename" yes
option "nan" n "Define NaN score"
float default="-320"
| Flag | Default | Type | Description |
| -i | stdin | Text file | Tab-delimited text file containing two columns, numerical gene IDs (one-based) and unique gene names (matching those in the input DAT/DAB files). |
| -d | . | Directory | Input directory containing DB files |
| -D | . | Directory | Output directory in which database files will be stored. |
| -x | . | Text file | Input file containing list of CDatabaselets to combine |
