Sleipnir: src/clustqtc.h Source File

00001 /*****************************************************************************
00002 * This file is provided under the Creative Commons Attribution 3.0 license.
00003 *
00004 * You are free to share, copy, distribute, transmit, or adapt this work
00005 * PROVIDED THAT you attribute the work to the authors listed below.
00006 * For more information, please see the following web page:
00007 * http://creativecommons.org/licenses/by/3.0/
00008 *
00009 * This file is a component of the Sleipnir library for functional genomics,
00010 * authored by:
00011 * Curtis Huttenhower (chuttenh@princeton.edu)
00012 * Mark Schroeder
00013 * Maria D. Chikina
00014 * Olga G. Troyanskaya (ogt@princeton.edu, primary contact)
00015 *
00016 * If you use this library, the included executable tools, or any related
00017 * code in your work, please cite the following publication:
00018 * Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, and
00019 * Olga G. Troyanskaya.
00020 * "The Sleipnir library for computational functional genomics"
00021 *****************************************************************************/
00022 #ifndef CLUSTQTC_H
00023 #define CLUSTQTC_H
00024 
00025 #include "clustqtci.h"
00026 
00027 namespace Sleipnir {
00028 
00033 class CClustQTC : CClustQTCImpl {
00034 public:
00035     static uint16_t Cluster( const CDataMatrix& MatData, const IMeasure* pMeasure, float dDiameter,
00036         size_t iSize, std::vector<uint16_t>& vecsClusters, const CDataMatrix* pMatWeights = NULL );
00037     static uint16_t Cluster( const CDistanceMatrix& MatSimilarities, float dDiameter, size_t iSize,
00038         std::vector<uint16_t>& vecsClusters );
00039     static void Cluster( const CDataMatrix& MatData, const IMeasure* pMeasure, float dMinDiameter,
00040         float dMaxDiameter, float dDeltaDiameter, size_t iSize, CDistanceMatrix& MatResults,
00041         const CDataMatrix* pMatWeights = NULL );
00042     static void Cluster( const CDistanceMatrix& MatSimilarities, float dMinDiameter, float dMaxDiameter,
00043         float dDeltaDiameter, size_t iSize, CDistanceMatrix& MatResults );
00044 };
00045 
00046 }
00047 
00048 #endif // CLUSTQTC_H