src/seekplatform.cpp

/*****************************************************************************
* This file is provided under the Creative Commons Attribution 3.0 license.
*
* You are free to share, copy, distribute, transmit, or adapt this work
* PROVIDED THAT you attribute the work to the authors listed below.
* For more information, please see the following web page:
* http://creativecommons.org/licenses/by/3.0/
*
* This file is a component of the Sleipnir library for functional genomics,
* authored by:
* Curtis Huttenhower (chuttenh@princeton.edu)
* Mark Schroeder
* Maria D. Chikina
* Olga G. Troyanskaya (ogt@princeton.edu, primary contact)
*
* If you use this library, the included executable tools, or any related
* code in your work, please cite the following publication:
* Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, and
* Olga G. Troyanskaya.
* "The Sleipnir library for computational functional genomics"
*****************************************************************************/
#include "seekplatform.h"
#include "seekreader.h"

namespace Sleipnir {

CSeekPlatform::CSeekPlatform(){
    m_iNumGenes = 0;
    m_vecfPlatformAvg.clear();
    m_vecfPlatformStdev.clear();
    m_strPlatformName = "";
}

CSeekPlatform::~CSeekPlatform(){
    m_vecfPlatformAvg.clear();
    m_vecfPlatformStdev.clear();
}

void CSeekPlatform::Copy(const CSeekPlatform &pl){
    m_iNumGenes = pl.m_iNumGenes;
    m_strPlatformName = pl.m_strPlatformName;
    m_vecfPlatformAvg.resize(pl.m_vecfPlatformAvg.size());
    m_vecfPlatformStdev.resize(pl.m_vecfPlatformStdev.size());
    copy(pl.m_vecfPlatformAvg.begin(), pl.m_vecfPlatformAvg.end(),
        m_vecfPlatformAvg.begin());
    copy(pl.m_vecfPlatformStdev.begin(), pl.m_vecfPlatformStdev.end(),
        m_vecfPlatformStdev.begin());
}

void CSeekPlatform::InitializePlatform(const utype &numGenes,
        const string &strPlatformName){
    m_iNumGenes = numGenes;
    CSeekTools::InitVector(m_vecfPlatformAvg, numGenes, (float) 0);
    CSeekTools::InitVector(m_vecfPlatformStdev, numGenes, (float) 0);
    m_strPlatformName = strPlatformName;
}

void CSeekPlatform::SetPlatformAvg(const utype &i, const float &val){
    m_vecfPlatformAvg[i] = val;
}
    
void CSeekPlatform::SetPlatformStdev(const utype &i, const float &val){
    m_vecfPlatformStdev[i] = val;
}
    
float CSeekPlatform::GetPlatformAvg(const utype &i) const{
    return m_vecfPlatformAvg[i];
}

float CSeekPlatform::GetPlatformStdev(const utype &i) const{
    return m_vecfPlatformStdev[i];
}

void CSeekPlatform::ResetPlatform(){
    m_iNumGenes = 0;
    m_vecfPlatformAvg.clear();
    m_vecfPlatformStdev.clear();
    m_strPlatformName = "";
}

}