Inheritance diagram for Sleipnir::CCoalesceGeneScores:
Public Member Functions | |
| bool | Add (size_t, const CCoalesceMotifLibrary &, const SFASTASequence &, SCoalesceModifierCache &, std::vector< std::vector< float > > &, std::vector< size_t > &) |
| bool | Add (size_t, const CCoalesceMotifLibrary &, const SFASTASequence &, SCoalesceModifierCache &, uint32_t, std::vector< float > &, std::vector< size_t > &) |
| void | Subtract (const SMotifMatch &, size_t) |
| bool | CalculateWeights () |
| float * | Get (size_t iType, ESubsequence eSubsequence, size_t iGene, bool fSet=false) const |
| float | Get (size_t iType, ESubsequence eSubsequence, size_t iGene, uint32_t iMotif) const |
| size_t | GetMotifs () const |
| void | SetGenes (size_t iGenes) |
| void | Validate () const |
Protected Member Functions | |
| float * | Get (size_t iType, ESubsequence eSubsequence) const |
| void | Set (size_t iType, ESubsequence eSubsequence, size_t iGene, uint32_t iMotif, float dValue, uint32_t iMotifs=0) |
| void | Grow (uint32_t iMotif, uint32_t iMotifs) |
Static Protected Member Functions | |
| static bool | Add (const CCoalesceMotifLibrary &, const std::string &, size_t, bool, std::vector< std::vector< float > > &, std::vector< size_t > &, size_t, SCoalesceModifierCache &) |
| static bool | Add (const CCoalesceMotifLibrary &, const std::string &, size_t, bool, uint32_t, std::vector< float > &, std::vector< size_t > &, size_t, SCoalesceModifierCache &) |
| static void | Add (ESubsequence eSubsequence, uint32_t iMotif, uint32_t iMotifs, vector< vector< float > > &vecvecdCounts, float dValue) |
Protected Attributes | |
| size_t | m_iGenes |
| size_t | m_iMotifs |
| size_t | m_iCapacity |
| pthread_mutex_t | m_mutx |
| std::vector< std::vector< float > > | m_vecvecdWeights |
Static Protected Attributes | |
| static const size_t | c_iLookahead = 128 |
Detailed Description
Definition at line 266 of file coalescei.h.
The documentation for this class was generated from the following files:
- src/coalescei.h
- src/coalesce.cpp
