Sleipnir::STermFound Struct Reference

Encapsulates the hypergeometric functional enrichment of a query against one ontology term. More...

#include <annotation.h>

Public Member Functions
	STermFound (size_t iID, double dP, size_t iHitsTerm, size_t iSizeTerm, size_t iHitsTotal, size_t iSizeTotal)
	Construct a new structure with the given parameter values.
Data Fields
size_t	m_iID
	ID of the ontology term for this enrichment.
double	m_dP
	Hypergeometric p-value of this enrichment.
size_t	m_iHitsTerm
	The number of genes in Q intersect T.
size_t	m_iSizeTerm
	The number of genes in T.
size_t	m_iHitsTotal
	The number of genes in Q.
size_t	m_iSizeTotal
	The total number of genes in the background set (genome).

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Detailed Description

Encapsulates the hypergeometric functional enrichment of a query against one ontology term.

Generated by an IOntology::TermFinder call, each STermFound struct represents the hypergeometric enrichment of one ontology term for a set of query genes. Documentation assumes a set of query genes Q and a set of term genes T.

See also:

IOntology

Definition at line 38 of file annotation.h.

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Constructor & Destructor Documentation

Sleipnir::STermFound::STermFound	(	size_t	iID,
		double	dP,
		size_t	iHitsTerm,
		size_t	iSizeTerm,
		size_t	iHitsTotal,
		size_t	iSizeTotal
	)		[inline]

Construct a new structure with the given parameter values.

Parameters:

iID	ID of the ontology term for this enrichment.
dP	Hypergeometric p-value of this enrichment.
iHitsTerm	The number of genes in Q intersect T.
iSizeTerm	The number of genes in T.
iHitsTotal	The number of genes in Q.
iSizeTotal	The total number of genes in the background set (genome).

Definition at line 92 of file annotation.h.

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The documentation for this struct was generated from the following file:

• src/annotation.h