Inheritance diagram for Sleipnir::CCoalesceImpl:
Data Structures | |
| struct | SThreadCombineMotif |
Protected Member Functions | |
| void | Clear () |
| size_t | GetMotifCount () const |
| bool | CombineMotifs (const CFASTA &, const std::vector< size_t > &, SCoalesceModifiers &, const CCoalesceCluster &, size_t, CCoalesceGeneScores &, CCoalesceGroupHistograms &, CCoalesceGroupHistograms &) const |
| bool | InitializeDatasets (const CPCL &) |
| bool | InitializeGeneScores (const CPCL &, const CFASTA &, std::vector< size_t > &, SCoalesceModifiers &, CCoalesceGeneScores &) |
Static Protected Member Functions | |
| static void * | ThreadCombineMotif (void *) |
| static void | Normalize (CPCL &) |
Protected Attributes | |
| float | m_dPValueMerge |
| float | m_dProbabilityGene |
| float | m_dPValueCondition |
| float | m_dZScoreCondition |
| float | m_dPValueCorrelation |
| float | m_dPValueMotif |
| float | m_dZScoreMotif |
| float | m_dCutoffMerge |
| size_t | m_iNumberCorrelation |
| size_t | m_iBins |
| size_t | m_iK |
| size_t | m_iSizeMerge |
| size_t | m_iSizeMinimum |
| size_t | m_iSizeMaximum |
| size_t | m_iThreads |
| std::string | m_strDirectoryIntermediate |
| CCoalesceMotifLibrary * | m_pMotifs |
| bool | m_fMotifs |
| bool | m_fNormalize |
| size_t | m_iBasesPerMatch |
| std::vector< SCoalesceDataset > | m_vecsDatasets |
| std::vector< const CFASTA * > | m_vecpWiggles |
| std::vector< std::ostream * > | m_vecpostm |
| std::vector< float > | m_vecdSeed |
Detailed Description
Definition at line 464 of file coalescei.h.
The documentation for this class was generated from the following files:
- src/coalescei.h
- src/coalesce.cpp
